Build your own database

547 pointsposted 4 months ago
by nansdotio

98 Comments

kragen

4 months ago

This article is attractively presented and seems to be well written, but I disagree with the framing:

> Databases were made to solve one problem:

> How do we store data persistently and then efficiently look it up later?

There are indeed things described as "databases" which are made to solve that problem, but more commonly such things are instead called "file formats" or, to old IBMers, "access methods".

As I see it, the much more interesting problem that databases solve, the one that usually distinguishes what we call "databases" from what we call "file formats", is query evaluation:

> How do we organize a large body of information such that we can easily answer questions efficiently from it?

Prolog, Datalog, QBE, QUEL, and SQL are approaches to expressing the questions, and indexing, materialized views, query planning, resolution, the WAM, and tabled resolution are approaches to answering them efficiently.

dbm is not a database. ISAM is not a database. But SQLite in :memory: is still a database.

mb2100

3 months ago

seems you've overlooked the word "efficiently" in "store data persistently and then efficiently look it up later"?

kragen

3 months ago

No, I did not. Possibly you think I did because you don't know what ISAM or dbm are.

tombert

4 months ago

I more or less built my own database in Erlang a few months ago. I say "more or less" because I did use Bitcask as the underlying store, and I used the riak_core libraries initially, but I did handle replication and different fault tolerance techniques on my own.

It was actually very fun; a key-value database is something that can be any level of difficulty that you want. If you want a simple KV "database", you could just serialize and deserialize a JSON string all the time, or write a protobuf, but there is of course no limit to the level of complexity.

I use the JSON example because that was actually how I started; I was constantly serializing and deserializing JSON with base64 binary encoded strings, just because it was easy and good enough, and over the course of building the project I ended up making a proper replicated database. I even had a very basic "query language" to handle some basic searches.

marci

4 months ago

Any repo? even if not production ready. I'm curious about how you approached replication, compared to mnesia or couchdb, especially now that erlang natively supports json.

tombert

4 months ago

Sadly it’s in a private repo as I had ambitions of trying to sell the product, which I haven’t completely given up on yet.

That said, a lot of the concepts come from riak_core, which is FOSS: https://github.com/OpenRiak/riak_core

skeptrune

4 months ago

I love the design and examples in this post. Easy to read for sure.

Exercises like this also seem fun in general. It's a real test of how much you know to start anything from scratch.

ashleyn

4 months ago

I was tempted to knee-jerk dismiss this as "don't write your own database, don't even use a KV database, just use SQL". And then I remembered the only reason I'd say this is because I went through designing my own DB or using KV databases just to avoid SQL...only to realise i was badly reinventing SQL. It could be worth the lesson.

kevinqi

4 months ago

my only minor critique is using lorem ipsum examples. It tends to make me want to gloss over instead of reading; I prefer seeing realistic data. other than that, it's a really cool post

kragen

4 months ago

You may be interested in http://canonical.org/~kragen/sw/dev3/exampledb.py -sql -n 2 example.sql:

    begin;
    insert into cust (id, name, company, streetaddress, city, state, zip) values (1, 'Jacqueline Gagnon', 'Baker Group', '218 Miller Dr.', 'Riverside', 'KS', '51859');
    commit;
    begin;
    insert into cust (id, name, company, streetaddress, city, state, zip) values (2, 'Wayne Bennett', 'FF Petroleum LLC', '4375 Moore Dr.', 'Mount Vernon', 'MS', '98270');
    select setval('cust_id_seq', 2);
    commit;
    begin;
    insert into product (id, name, unitprice) values (1, 'Biological blue steel doll', 30.4);
    commit;
    begin;
    insert into product (id, name, unitprice) values (2, 'Gray cotton electronic boxers, size L', 13.3);
    insert into product (id, name, unitprice) values (3, 'Blue cotton intimate blazer, ages 2–5', 37.3);
    insert into product (id, name, unitprice) values (4, 'Daily beige steel car', 14.6);
    insert into product (id, name, unitprice) values (5, 'Black spandex daily blazer, size L', 24.1);
    insert into product (id, name, unitprice) values (6, 'Blue wool dynamic briefs, ages 3–10', 79.0);
    insert into product (id, name, unitprice) values (7, 'Blue spandex ultrasonic dress, child’s size', 31.9);
    insert into product (id, name, unitprice) values (8, 'Gold wool daily boxers, ages 3–10', 8.85);
    insert into product (id, name, unitprice) values (9, 'Red cotton utility boxers, ages 2–5', 28.9);
    insert into product (id, name, unitprice) values (10, 'Gray polyester ultrasonic briefs, ages 3–10', 15.3);
    -- ...
It also creates the tables, including invoice and lineitem tables. It's still a bit of a dull accounting example, rather than something like food, superheroes, social networks, zoo animals, sports, or dating, but I think the randomness does add a little bit of humor.

Although now we have LLMs, and maybe they'd do a better job.

WD-42

4 months ago

Was going to post the same thing. Lorem Ipsum makes the data too hard to distinguish. I get that due to the dynamic nature of the examples the text needed to be generated, but Latin isn't the best choice IMO.

Otherwise great article, thank you!

doublerabbit

4 months ago

It's the same for me when foo and bar are used as examples.

samwho

4 months ago

Someone gave me the advice to use animals, ideally animals of very different sizes or colours. People instantly picture them and remember them.

shellfishgene

4 months ago

It's very nice, but I think he should expand on why hash tables are fast/constant time lookup. It's a central concept to why the index makes the db fast.

jumploops

4 months ago

“LSM trees are the underlying data structure used for [..] DynamoDB, and they have proven to perform really well at scale [..] 80 million requests per second!”

This is a tad bit misleading, as the LSM is used for the node-level storage engine, but doesn’t explain how the overall distributed system scales to 80 million rps.

iirc the original Dynamo paper used BerkeleyDB (b-tree or LSM), but the 2012 paper shifted to a fully LSM-based engine.

keybored

4 months ago

Part of the reason why I'm not a "maker" is because my mind gets ahead of me with all the things that I would need to do in order to do things properly. So the article starts out interesting and then gets more and more, well, not exactly stressful but I get a bit weary by it.

Not that I would aspire to implement a general-purpose database. But even smaller tasks can make my mind spin too much.

ozgrakkurt

4 months ago

I have this same issue but lately I am realizing it is about belief and made great progress fixing it.

For me it is all about believing that I’ll succeed and realizing that the belief doesn’t really correlate with technical aspect as much as I think it does.

If I believe I won’t succeed, I spend every moment trying to find the problem that will finally end me. And every problem becomes a death sentence.

If I believe I’ll succeed, problems become temporary obstacles and all my focus is on how I’ll overcome the current obstacle.

keybored

3 months ago

Thanks. That’s helpful.

browningstreet

4 months ago

I don't disagree with your take in general, but I do think it's different reading about minutiae than being invested in it. If you actually are curing these requirements it's probably quite engaging. If not, the eyes and mind start to gloss over them.

As a different example: I'm moving this week. I've known I'm moving for a while. Thinking about moving -- and all the little things I have to do -- is way more painful than doing them. Thinking about them keeps me up at night, getting through my list today is only fractionally painful.

I'm also leveling up a few aspects of my "way of living" in the midst of all this, and it'd be terribly boring to tell others about it, but when next Monday comes.. it'll be quite sweet indeed.

keybored

4 months ago

> As a different example: I'm moving this week. I've known I'm moving for a while. Thinking about moving -- and all the little things I have to do -- is way more painful than doing them. Thinking about them keeps me up at night, getting through my list today is only fractionally painful.

this sounds familiar... :)

nawgz

4 months ago

Have you considered if you have ADHD?

keybored

3 months ago

I have thought about it.

TheAnkurTyagi

4 months ago

A very nice explanation with visual interactions of how database works internally. author is a great teacher.

constantcrying

4 months ago

I absolutely love this "first principles" approach of explaining a topic. You can really go through this and at each time understand what problem needs to be solved and what other problems this introduces, until you get at a reasonably satisfying solution.

chrisallick

4 months ago

if author is reading, can you add an rss feed to your site? i want to add to feedly.

jayfair

4 months ago

I've found Kill The Newsletter works pretty well for the few things I want to follow that still insist on email delivery. https://kill-the-newsletter.com/

chrisallick

4 months ago

omg genius lol. thats such a simple and smart utility. i might try and make a chrome extension for this.

jamwil

4 months ago

I was quite excited to add this one! And shocked to not find it, given the overall high production quality.

darkstar_16

4 months ago

One of our final projects during university was to design and program a basic database in C. Even after 20 years I think that was one of the most one I've had in a project.

FpUser

4 months ago

>Problem. How do we store data persistently and then efficiently look it up later?"

I would say without transactions it is not a database yet from a practical standpoint.

dangoodmanUT

4 months ago

I think a lot of databases would disagree

socketcluster

4 months ago

You can implement two-phase commit instead. It requires a bit of additional planning in terms of data management but I actually find it much more elegant and it scales better. DB transactions are expensive and unnecessarily complicated.

You can have a really simple two-phase commit system where you initially mark all records as 'pending' and then update them as 'settled' once all the necessary associated rows have been inserted into their respective tables. You can record a timestamp so that you know where to resume the settlement process from. I once had multiple processes doing settlement in parallel by hashing the ids to map to specific processes so it scales really well.

FpUser

4 months ago

>"You can implement two-phase commit instead"

Two-phase commit is a particular way of implementing transaction when system is distributed. There is no "instead" here

socketcluster

3 months ago

System doesn't have to be distributed. In general it just needs to separate the insertion of records from their settlement.

FpUser

4 months ago

You might be on to something here ;)

alecco

4 months ago

But they are web scale!

codezero

4 months ago

If you want to store key values in a file, one fun and ridiculous technique is to use xattrs :)

I made a pointless program to help w/ this on macOS for kicks: https://github.com/radiofreejohn/xattrkv

When I made it I also found a bug in the xattr implementation for Darwin and submitted it to Apple, they eventually fixed it.

exdeejay_

4 months ago

The first example in the "Sorting in Practice" section appears to be broken. The text makes it seem like the list should be sorted in-memory and then written to disk sorted, but the example un-sorts the list when it's written to disk.

Edit: the flush example (2nd one) in the recap section does the same thing, when the text says that the records are supposed to be written to the file in sorted order.

0xb0565e486

4 months ago

I have spending the last ~4 weeks writing a triple store!

I wish this came out earlier, there are a few insights in there that took me me a while to understand :)

vladpowerman

4 months ago

Great read. I’ve been modeling developer activity as a time series key value system where each developer is a key and commits are values. Faced the same issues: logs grow fast, indexes get heavy, range queries slow down. How do you decide what to drop when compacting segments? Balancing freshness and retention is tricky.

withinboredom

4 months ago

I'm curious how much data you have? I have 12 years of dev data and reports are generated in seconds, if not milliseconds. What is your key patterns? It sounds like a key-design problem.

LourensT

4 months ago

Great post and beautiful website. I got a bit confused by the flush operation that happens when the memtable is full. A quick note that a new on-disk segment is created would help. In the recap at the end, segmentation is also not mentioned.

curtisblaine

4 months ago

This gets fuzzy around the end - indexes are depicted as separate (partial) entities. Do we store all of those separated in different files? If so, do we need to open them all to search for a record?

235ylkj

4 months ago

Here's a simple key-value store inspired by D.B. Cooper:

  ~/bin/cooper-db-set
  ===================
  #! /bin/bash

  key="$1"
  value="$2"

  echo "${key}:${value}" >> /dev/null


  ~/bin/cooper-db-get
  ===================
  #! /bin/bash

  key="$1"
  </dev/null awk -F: -v key="$key" '$1 == key {result = $2} END {print result}'

MathMonkeyMan

4 months ago

/dev/null is persistent across restarts and cache friendly, so it's got you covered.

user

4 months ago

[deleted]

DiabloD3

4 months ago

It looks like it got hugged to death already.

winrid

4 months ago

Needs a faster database

orliesaurus

4 months ago

am i the only one who IS a huge fan of this blogpost layout

saxelsen

4 months ago

Nice interactivity, but this is taken straight from the Designing Data-Intensive Applications. Literally all the content here is an interactive version of chapter 3.

Maybe give credit?

nansdotio

4 months ago

Hey! Author of the post here.

While the text itself is my own words, the logical structure and the examples were indeed based off DDIA's chapter 3. I dropped the ball here - the site has been updated with proper attribution.

tomhow

4 months ago

Thanks, we've added this to the thread's top text.

oneeyedpigeon

4 months ago

Come on, that's not enough. a) The parent said "taken straight from" but you've watered that down to "inspired by"; which is it? b) You've edited this post on HN, but the actual original article still makes no mention of the source.

tomhow

4 months ago

Yep, fair enough. We've had contact with the post's publisher, and whilst it would be unfair of us to disclose the details of the communication, I've now updated the header text (to what I originally posted there when I first saw the root comment's allegation), and have down-weighted the post.

user

4 months ago

[deleted]

user

4 months ago

[deleted]

4ndrewl

4 months ago

> Databases were made to solve one problem:

>

> "How do we store data persistently and then efficiently look it up later?"

Isn't that two problems?

nonethewiser

4 months ago

It's amusing to me that this is really quite a pedantic observation yet it's driving very earnest engagement from hackernews. Myself included. Absolutely nothing in this article is riding on if its 1 or 2 problems - it's an aside at best. Yet I'm still trying to think through if it's 1 or 2. I mean, the "and" is right there - that clearly suggests two. It's almost comical even, to say "Here is one problem: X and Y." Yet in another way it seems like 2 sides of the same coin.

I guess there is a rather fine line between philosophy and pedantry.

Maybe we can think about it from another angle. If they are 2 problems databases were designed to solve, then that means this is a problem databases were designed to solve: storing data persistently.

Is that really a problem database were designed to solve? Not really. We had that long before databases. It was already solved. It's a pretty fundamental computer operation. Isn't it fair to say this is one thing? "Storing data so it can be retrieved efficiently."

grokgrok

4 months ago

How do we reconstruct past memory states? That's the fundamental problem.

Efficiency of storage or retrieval, reliability against loss or corruption, security against unwanted disclosure or modification are all common concerns, and the relative values assigned to these features and others motivate database design.

kiitos

4 months ago

> How do we reconstruct past memory states? That's the fundamental problem.

reconstructing past memory states is rarely, if ever, a requirement that needs to be accommodated in the database layer

nonethewiser

4 months ago

Can you elaborate? That certainly seems to be what happens in a typical crud app. You have some model for your data which you persist so that it can be loaded later. Perhaps partially at times.

In another context perhaps you're ingesting data to be used in analytics. Which seems to fit the "reconstruct past memory stat" less.

grokgrok

3 months ago

Presumably the analysis will retrieve stored memory states from the ingestion phase to then perform useful calculation, or else why is there a database?

i_k_k

4 months ago

I always wanted to ship a write-only database. Lightning fast.

elygre

4 months ago

Back in the 80s a professor at our college got a presentation on the concept of «write-only memory» accepted for some symposium.

Good times.

user

4 months ago

[deleted]

pcdevils

4 months ago

Pretty much how eventstoredb works. Deleting data fully only happens at scavenge which rewrites the data files.

hxtk

4 months ago

I think it was a joke. It sounds like you read it as append-only, like most LSM tree databases (not rewriting files in the course of write operations), but I think GP meant it as write-only to the exclusion of reads, roughly equivalent to `echo $data > /dev/null`

archerx

4 months ago

That would be useful for logging.

warkdarrior

4 months ago

If it's write-only, and no reads ever happen, one can write to /dev/null without loss of utility.

mewpmewp2

4 months ago

It would be good for before going to sleep then.

Etheryte

4 months ago

Also useful for backups, so long as you don't need to restore.

mrighele

4 months ago

It is a single problem that contains two smaller problems, but the actual hard part (a third problem, if you wish) is putting them together. If you limit yourself to solve those two problems independently you won't have a (useful) database.

mamcx

4 months ago

You can decompose in 2 problems, because well is better, but is in fact one. Can be argued that is only this single problem:

How, in ACID way, store data that will be efficiently look it up later by a unknown number of clients and unknown access patterns, concurrently, without blocking all the participants, in a fast way?

And then add SQL (ouch!)

didip

4 months ago

Off by 1 error is indeed a hard problem.

dayjaby

4 months ago

Store data persistently so it can be looked up efficiently* sounds like a single problem.

SirFatty

4 months ago

Definitely two.

SahAssar

4 months ago

"Store data persistently" implies "it can be looked up" since if you cannot look it up it is impossible to know if it is stored persistently.

The "efficiently" part can be considered a separate problem though.

prerok

4 months ago

Well, if you just want to store data, you can use files. Lookup is a bit tedious and inefficient.

So, if we consider that persistent storage is a solved problem, then we can say that the reason for databases was how to look up data efficiently. In fact, that is why they were invented, even if persistent storage is a prerequisite.

nonethewiser

4 months ago

How about "store data in certain way." That sounds more like 1 problem and encompasses an even larger problem space.

lelanthran

4 months ago

>> "How do we store data persistently and then efficiently look it up later?"

> Isn't that two problems?

Only if you're creating a write-only database, in which case just write it to /dev/null.

pratik661

4 months ago

This is analogous to an elevator that’s unidirectional

rzzzt

4 months ago

One that lets people enter. We will figure out exiting later, with exiting on a different floor as a stretch goal.

whartung

4 months ago

> Isn't that two problems?

No, that would be regexes.